Carleton Bioinformatics
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Protocols:
Week 1: Pre-lab software checklist
Week 2: Introduction to Unix/Linux and the Server; Assembly with IDBA-UD; ORF Calling and Annotation with Prokka
Week 3: Local alignments and sequence search with BLAST, global alignments with MUSCLE, and making trees with RAxML
Week 4: Mapping with bowtie2
Week 5: Binning genomes with anvi’o
Week 6: Classifying taxonomy of short reads with mothur
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