BIOL338: Genomics & Bioinformatics @ Carleton College¶
- Week 1: Pre-lab software checklist
- Week 2: Introduction to Unix/Linux and the Server; Assembly with IDBA-UD; ORF Calling and Annotation with Prokka
- Week 3: Local alignments and sequence search with BLAST, global alignments with MUSCLE, and making trees with RAxML
- Week 4: Mapping with bowtie2
- Week 5: Binning genomes with anvi’o
- Week 6: Classifying taxonomy of short reads with mothur